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Jacks: Joint analysis of CRISPR/Cas9 knockout screens
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Reconstruction of evolving gene variants and fitness from short sequencing reads
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SCEPTRE improves calibration and sensitivity in single-cell CRISPR screen analysis
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Co-varying neighborhood analysis identifies cell populations associated with phenotypes of interest from single-cell transcriptomics
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A comprehensive fitness landscape model reveals the evolutionary history and future evolvability of eukaryotic cis-regulatory DNA sequences
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